Bioinformatics/Subsequence: Difference between revisions
Added FreeBasic
Thundergnat (talk | contribs) m (→{{header|Raku}}: Allow for later versions to work) |
(Added FreeBasic) |
||
Line 311:
600 39 .biosub nl</syntaxhighlight>
{{out}}
<pre> 0: ATTCAAGGAC
10: CACTATTAAC
20: CTGCATTGTG
Line 345 ⟶ 344:
145..149
289..293
312..316</pre>
</pre>▼
=={{header|FreeBASIC}}==
{{trans|Wren}}
<syntaxhighlight lang="vb">Const base_ = "ACGT"
Sub findDnaSubsequence(dnaSize As Integer, chunkSize As Integer)
Dim As String dnaSeq(1 To dnaSize)
Dim As Integer i, chunk
For i = 1 To dnaSize
dnaSeq(i) = Mid(base_, Int(Rnd * 4)+1, 1)
Next
Dim As String dnaStr
For i = 1 To dnaSize
dnaStr += dnaSeq(i)
Next
Dim As String dnaSubseq(1 To 4)
For i = 1 To 4
dnaSubseq(i) = Mid(base_, Int(Rnd * 4)+1, 1)
Next
Dim As String dnaSubstr
For i = 1 To 4
dnaSubstr += dnaSubseq(i)
Next
Print "DNA sequence:"
For chunk = 1 To Len(dnaStr) Step chunkSize
Print Using "###_._.###: &"; chunk; chunk+chunkSize-1; Mid(dnaStr, chunk, chunkSize)
Next
Print !"\nSubsequence to locate: "; dnaSubstr
Dim As Integer idx = Instr(dnaStr, dnaSubstr)
Print Iif(idx <> 0, "Matches found at the following indices:", "No matches found.")
Do While idx > 0
If idx <> 0 Then Print Using "###_._.###"; idx; idx + 3
idx = Instr(idx+4, dnaStr, dnaSubstr)
Loop
End Sub
findDnaSubsequence(200, 20)
Print
findDnaSubsequence(600, 40)
Sleep</syntaxhighlight>
{{out}}
<pre>DNA sequence:
1.. 20: TTATAGTCTTGGAGGCATGT
21.. 40: TAACTTATGCGGAGCAGACA
41.. 60: CGGAGTATGCATTCCTCTTA
61.. 80: CCAAACGGTGCTGCCCGCGC
81..100: ACTCGCTGTATTCCGTATCG
101..120: TCACATTATCTAAACCACGA
121..140: TTTCCAGCGTGCGTGGGAAG
141..160: GCCATGTTTAGTCGGGGGCC
161..180: AAGGTCTTTGGCTTATGCTG
181..200: TTTTTTTTTCTTCGGTTACA
Subsequence to locate: ATTT
Matches found at the following indices:
120..123
DNA sequence:
1.. 40: GTGCGGGCCGTTAGCAGCTACGAGTGCTAGATGGAACTAG
41.. 80: TCCCCGCTCCCAAATGCAAAGCGTCCCAGACCAGTCTTGA
81..120: AGCCCGTTAAATTACACCTGAACCGTTGCAAATGATCGAT
121..160: AGACGGGGTATAATAGCGGAAAACACAGGGGAACTGCATG
161..200: CAAGCTCGAGCCGCTGAAGGATGGCTCCCCCCCGAGTGTA
201..240: AGTGGATCTCGCCCAAATAGCGGGGGAACAAAGAAAGGTA
241..280: AGTCTTACTTCGCACGTCCCCTCTCATACACGCCAGGACT
281..320: AATGGATCATTCATAGGTGACGGGTGACTTGCGGTGTTTC
321..360: TAGTTGGAGTCACCCGTCAGCTTAGATCTAAGTATGAACC
361..400: GTAAGAGTTTGTAACTGCACCTTCCGTCTCTTCCTCTGTA
401..440: GGAACGCTTTTGCTTGTTATCAGATAGTGTCTCCTTATCA
441..480: TAGGACAGGTTCCTTGTGAAGGTCCACAGAGTTTGCCCGG
481..520: GGTTCGAATATACGACGCTTGTGGTTCCGGCACTATAACT
521..560: TCCGCAGTGTTGTCGACGCCCCTAGCTCCCGGGGTCTTTT
561..600: CGCTTCCCTATAGCGCGAAATGAGTGCAAGGGTACCGGCC
Subsequence to locate: GCAC
Matches found at the following indices:
252..255
377..380
▲510..513</pre>
=={{header|Go}}==
{{trans|Wren}}
| |||