Cholesky decomposition: Difference between revisions

;Note:

# The Cholesky decomposition of a [[Pascal matrix generation‎|Pascal]] upper-triangle matrix is the [[wp:Identity matrix|Identity matrix]] of the same size.

 

 

=={{header|Ada}}==

{{works with|Ada 2005}}

decomposition.ads:

generic

with package Matrix is new Ada.Numerics.Generic_Real_Arrays (<>);

procedure Decompose (A : Matrix.Real_Matrix; L : out Matrix.Real_Matrix);

 

 

decomposition.adb:

 

package body Decomposition is

end loop;

end Decompose;

 

Example usage:

with Ada.Text_IO;

with Decomposition;

Ada.Text_IO.Put_Line ("A:"); Print (Example_2);

Ada.Text_IO.Put_Line ("L:"); Print (L_2);

{{out}}

<pre>Example 1:

12.728 3.046 1.650 0.000

9.899 1.625 1.850 1.393</pre>

=={{header|ALGOL 68}}==

{{trans|C}} Note: This specimen retains the original [[#C|C]] coding style. [http://rosettacode.org/mw/index.php?title=Cholesky_decomposition&action=historysubmit&diff=107753&oldid=107752 diff]

{{works with|ALGOL 68G|Any - tested with release [http://sourceforge.net/projects/algol68/files/algol68g/algol68g-1.18.0/algol68g-1.18.0-9h.tiny.el5.centos.fc11.i386.rpm/download 1.18.0-9h.tiny].}}

{{wont work with|ELLA ALGOL 68|Any (with appropriate job cards) - tested with release [http://sourceforge.net/projects/algol68/files/algol68toc/algol68toc-1.8.8d/algol68toc-1.8-8d.fc9.i386.rpm/download 1.8-8d] - due to extensive use of '''format'''[ted] ''transput''.}}

 

MODE FIELD=LONG REAL;

MAT c2 = cholesky(m2);

print matrix(c2)

{{out}}

<pre>

( 9.89949, 1.62455, 1.84971, 1.39262))

</pre>

 

=={{header|BBC BASIC}}==

{{works with|BBC BASIC for Windows}}

m1() = 25, 15, -5, \

\ 15, 18, 0, \

PRINT

NEXT row%

'''Output:'''

<pre>

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|C}}==

#include <stdlib.h>

#include <math.h>

 

return 0;

{{out}}

<pre>5.00000 0.00000 0.00000

12.72792 3.04604 1.64974 0.00000

9.89949 1.62455 1.84971 1.39262</pre>

=={{header|C sharp|C#}}==

using System.Collections.Generic;

using System.Linq;

}

}

 

{{out}}

Test 1:

12.72792, 3.04604, 1.64974, 0.00000,

9.89949, 1.62455, 1.84971, 1.39262,

 

 

=={{header|Clojure}}==

{{trans|Python}}

[matrix]

(let [n (count matrix)

(Math/sqrt (- (aget A i i) s))

(* (/ 1.0 (aget L j j)) (- (aget A i j) s))))))

Example:

;=> [[ 5.0 0.0 0.0]

; [ 3.0 3.0 0.0]

; [ 5.185449728701349 6.565905201197403 0.0 0.0 ]

; [12.727922061357857 3.0460384954008553 1.6497422479090704 0.0 ]

=={{header|Common Lisp}}==

;; for a positive-definite, symmetric nxn matrix A.

(defun chol (A)

 

;; Return the calculated matrix L.

 

(setf A (make-array '(3 3) :initial-contents '((25 15 -5) (15 18 0) (-5 0 11))))

(chol A)

#2A((5.0 0 0)

(3.0 3.0 0)

 

(setf B (make-array '(4 4) :initial-contents '((18 22 54 42) (22 70 86 62) (54 86 174 134) (42 62 134 106))))

(chol B)

(5.18545 6.565905 0 0)

(12.727922 3.0460374 1.6497375 0)

 

;; as above, returns the Cholesky decomposition matrix of a square positive-definite, symmetric matrix

(defun cholesky (m)

(setf (cdr (last l)) (list (nconc x (list (sqrt (- (elt cm (incf j)) (*v x x))))))))))

;; where *v is the scalar product defined as

 

CL-USER> (setf a '((25 15 -5) (15 18 0) (-5 0 11)))

((25 15 -5) (15 18 0) (-5 0 11))

3 3 0

-1 1 3

 

CL-USER> (setf a '((18 22 54 42) (22 70 86 62) (54 86 174 134) (42 62 134 106)))

((18 22 54 42) (22 70 86 62) (54 86 174 134) (42 62 134 106))

12.72792 3.04604 1.64974 0.00000

9.89950 1.62455 1.84971 1.39262

=={{header|D}}==

 

T[][] cholesky(T)(in T[][] A) pure nothrow /*@safe*/ {

[42, 62, 134, 106]];

writefln("%(%(%2.3f %)\n%)", m2.cholesky);

{{out}}

<pre> 5 0 0

12.728 3.046 1.650 0.000

9.899 1.625 1.850 1.393</pre>

=={{header|DWScript}}==

{{Trans|C}}

var

i, j, k, n : Integer;

42.0, 62.0, 134.0, 106.0 ];

var c2 := Cholesky(m2);

 

=={{header|Fantom}}==

** Cholesky decomposition

**

runTest ([[18f,22f,54f,42f],[22f,70f,86f,62f],[54f,86f,174f,134f],[42f,62f,134f,106f]])

}

{{out}}

<pre>

[[4.242640687119285, 0.0, 0.0, 0.0], [5.185449728701349, 6.565905201197403, 0.0, 0.0], [12.727922061357857, 3.0460384954008553, 1.6497422479090704, 0.0], [9.899494936611667, 1.624553864213788, 1.8497110052313648, 1.3926212476456026]]

</pre>

=={{header|Fortran}}==

! *************************************************!

! LBH @ ULPGC 06/03/2014

end do

 

{{out}}

<pre>

=={{header|FreeBASIC}}==

{{trans|BBC BASIC}}

' compile with: fbc -s console

 

Print : Print "hit any key to end program"

Sleep

{{out}}

<pre> 5.00000 0.00000 0.00000

12.72792 3.04604 1.64974 0.00000

9.89949 1.62455 1.84971 1.39262</pre>

 

=={{header|Go}}==

===Real===

This version works with real matrices, like most other solutions on the page. The representation is packed, however, storing only the lower triange of the input symetric matrix and the output lower matrix. The decomposition algorithm computes rows in order from top to bottom but is a little different thatn Cholesky–Banachiewicz.

 

import (

fmt.Println("L:")

a.choleskyLower().print()

{{out}}

<pre>

===Hermitian===

This version handles complex Hermitian matricies as described on the WP page. The matrix representation is flat, and storage is allocated for all elements, not just the lower triangles. The decomposition algorithm is Cholesky–Banachiewicz.

 

import (

a.print(heading)

a.choleskyDecomp().print("Cholesky factor L:")

{{out}}

<pre>

</pre>

 

 

import (

"fmt"

 

)

 

func cholesky(order int, elements []float64) fmt.Formatter {

}

 

42, 62, 134, 106,

}))

{{out}}

<pre>

 

===Library go.matrix===

 

import (

fmt.Println("L:")

fmt.Println(l)

Output:

<pre>

9.899495, 1.624554, 1.849711, 1.392621}

</pre>

 

=={{header|Haskell}}==

We use the [http://en.wikipedia.org/wiki/Cholesky_decomposition#The_Cholesky.E2.80.93Banachiewicz_and_Cholesky.E2.80.93Crout_algorithms Cholesky–Banachiewicz algorithm] described in the Wikipedia article.

 

The Cholesky module:

 

import Data.Array.IArray

return l

where maxBnd = fst . snd . bounds

The main module:

import Data.List

import Cholesky

main = do

putStrLn $ showMatrice 3 $ elems $ cholesky ex1

<b>output:</b>

<pre>

</pre>

 

=={{header|Icon}} and {{header|Unicon}}==

result := make_square_array (*array)

every (i := 1 to *array) do {

do_cholesky ([[25,15,-5],[15,18,0],[-5,0,11]])

do_cholesky ([[18,22,54,42],[22,70,86,62],[54,86,174,134],[42,62,134,106]])

{{out}}

<pre>

9.899494937 1.624553864 1.849711005 1.392621248

</pre>

=={{header|Idris}}==

'''works with Idris 0.10'''

 

'''Solution:'''

 

import Data.Vect

print ex2

putStrLn "\n"

 

{{out}}

[[4.242640687119285, 0, 0, 0], [5.185449728701349, 6.565905201197403, 0, 0], [12.72792206135786, 3.046038495400855, 1.64974224790907, 0], [9.899494936611665, 1.624553864213789, 1.849711005231382, 1.392621247645587]]

</pre>

=={{header|J}}==

'''Solution:'''

h =: +@|: NB. conjugate transpose

 

L0,(T mp L0),.L1

end.

See [[j:Essays/Cholesky Decomposition|Cholesky Decomposition essay]] on the J Wiki.

{{out|Examples}}

eg2=: 18 22 54 42 , 22 70 86 62 , 54 86 174 134 ,: 42 62 134 106

cholesky eg1

5.18545 6.56591 0 0

12.7279 3.04604 1.64974 0

'''Using `math/lapack` addon'''

load 'math/lapack/potrf'

potrf_jlapack_ eg1

5.18545 6.56591 0 0

12.7279 3.04604 1.64974 0

=={{header|Java}}==

{{works with|Java|1.5+}}

 

public class Cholesky {

System.out.println(Arrays.deepToString(chol(test2)));

}

{{out}}

<pre>[[5.0, 0.0, 0.0], [3.0, 3.0, 0.0], [-1.0, 1.0, 3.0]]

[[4.242640687119285, 0.0, 0.0, 0.0], [5.185449728701349, 6.565905201197403, 0.0, 0.0], [12.727922061357857, 3.0460384954008553, 1.6497422479090704, 0.0], [9.899494936611667, 1.624553864213788, 1.8497110052313648, 1.3926212476456026]]</pre>

 

=={{header|jq}}==

{{Works with|jq|1.4}}

'''Infrastructure''':

def matrix(m; n; init):

if m == 0 then []

else [ ., 0, 0, length ] | test

end ;

if is_symmetric then

length as $length

end ))

else error( "cholesky_factor: matrix is not symmetric" )

'''Task 1''':

[[25,15,-5],[15,18,0],[-5,0,11]] | cholesky_factor

[42, 62, 134, 106]] | cholesky_factor | neatly(20)

{{Out}}

5.185449728701349 6.565905201197403 0 0

12.727922061357857 3.0460384954008553 1.6497422479090704 0

=={{header|Julia}}==

Julia's strong linear algebra support includes Cholesky decomposition.

a = [25 15 5; 15 18 0; -5 0 11]

b = [18 22 54 22; 22 70 86 62; 54 86 174 134; 42 62 134 106]

println(a, "\n => \n", chol(a, :L))

println(b, "\n => \n", chol(b, :L))

 

{{out}}

9.899494936611667 1.624553864213788 1.8497110052313648 1.3926212476456026]

</pre>

=={{header|Kotlin}}==

{{trans|C}}

 

fun cholesky(a: DoubleArray): DoubleArray {

val c2 = cholesky(m2)

showMatrix(c2)

 

{{out}}

9.89949 1.62455 1.84971 1.39262

</pre>

 

=={{header|Maple}}==

The Cholesky decomposition is obtained by passing the `method = Cholesky' option to the LUDecomposition procedure in the LinearAlgebra pacakge. This is illustrated below for the two requested examples. The first is computed exactly; the second is also, but the subsequent application of `evalf' to the result produces a matrix with floating point entries which can be compared with the expected output in the problem statement.

[25 15 -5]

[ ]

[12.72792206 3.046038495 1.649742248 0. ]

[ ]

=={{header|Mathematica}} / {{header|Wolfram Language}}==

Without the use of built-in functions, making use of memoization:

Module[{L},

L[k_, k_] := L[k, k] = Sqrt[A[[k, k]] - Sum[L[k, j]^2, {j, 1, k-1}]];

L[i_, k_] := L[i, k] = L[k, k]^-1 (A[[i, k]] - Sum[L[i, j] L[k, j], {j, 1, k-1}]);

PadRight[Table[L[i, j], {i, Length[A]}, {j, i}]]

=={{header|MATLAB}} / {{header|Octave}}==

The cholesky decomposition chol() is an internal function

25 15 -5

15 18 0

[L] = chol(A,'lower')

[L] = chol(B,'lower')

{{out}}

<pre> > [L] = chol(A,'lower')

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|Maxima}}==

 

a: hilbert_matrix(4)$

b . transpose(b) - a;

=={{header|Nim}}==

{{trans|C}}

 

for j in 0 .. i:

var s = 0.0

s += result[i][k] * result[j][k]

result[i][j] = if i == j: sqrt(a[i][i]-s)

 

result = ""

for b in a:

for c in b:

 

let m1 = [[25.0, 15.0, -5.0],

[54.0, 86.0, 174.0, 134.0],

[42.0, 62.0, 134.0, 106.0]]

 

 

=={{header|Objeck}}==

{{trans|C}}

 

class Cholesky {

function : Main(args : String[]) ~ Nil {

}

}

 

<pre>

9.89949494 1.62455386 1.84971101 1.39262125

</pre>

=={{header|OCaml}}==

let n = Array.length inp in

let res = Array.make_matrix n n 0.0 in

[|22.0; 70.0; 86.0; 62.0|];

[|54.0; 86.0; 174.0; 134.0|];

{{out}}

<pre>in:

12.72792 3.04604 1.64974 0.00000

9.89949 1.62455 1.84971 1.39262</pre>

=={{header|ooRexx}}==

{{trans|REXX}}

niner = '25 15 -5' , /*define a 3x3 matrix. */

'15 18 0' ,

do j=0 while h>9; m.j=h; h=h%2+1; end /*j*/

do k=j+5 to 0 by -1; numeric digits m.k; g=(g+x/g)*.5; end /*k*/

=={{header|PARI/GP}}==

 

{

my (L = matrix(#M,#M));

);

L

 

Output: (set displayed digits with: \p 5)

[9.8995 1.6246 1.8497 1.3926]

</pre>

=={{header|Pascal}}==

 

type

D2Array = array of array of double;

function cholesky(const A: D2Array): D2Array;

 

procedure printM(const A: D2Array);

begin

end;

 

const

var

cIn, cOut: D2Array;

 

setlength(cIn, length(m1), length(m1));

for index := low(m1) to high(m1) do

cOut := cholesky(cIn);

printM(cOut);

 

writeln;

setlength(cIn, length(m2), length(m2));

for index := low(m2) to high(m2) do

cOut := cholesky(cIn);

printM(cOut);

{{out}}

<pre>

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|Perl}}==

my $matrix = shift;

my $chol = [ map { [(0) x @$matrix ] } @$matrix ];

print "\nExample 2:\n";

print +(map { sprintf "%7.4f\t", $_ } @$_), "\n" for @{ cholesky $example2 };

{{out}}

<pre>

9.8995 1.6246 1.8497 1.3926

</pre>

=={{header|Phix}}==

{{trans|Sidef}}

{{out}}

<pre>

{9.899494937,1.624553864,1.849711005,1.392621248}}

</pre>

=={{header|PicoLisp}}==

(load "@lib/math.l")

 

(for R L

(for N R (prin (align 9 (round N 5))))

Test:

'((25.0 15.0 -5.0) (15.0 18.0 0) (-5.0 0 11.0)) )

 

(22.0 70.0 86.0 62.0)

(54.0 86.0 174.0 134.0)

{{out}}

<pre> 5.00000 0.00000 0.00000

12.72792 3.04604 1.64974 0.00000

9.89949 1.62455 1.84971 1.39262</pre>

=={{header|PL/I}}==

decompose: procedure options (main); /* 31 October 2013 */

declare a(*,*) float controlled;

end cholesky;

 

ACTUAL RESULTS:-

<pre>Original matrix:

9.89950 1.62455 1.84971 1.39262

</pre>

=={{header|PowerShell}}==

function cholesky ($a) {

$l = @()

$n = $a.count

$end = $n - 1

foreach ($k in 0..$end) {

$m = $k - 1

$l

}

$a1 = @(

@(25, 15, -5),

"l2 ="

show (cholesky $a2)

<b>Output:</b>

<pre>

9.89949493661167 1.62455386421379 1.84971100523138 1.39262124764559

</pre>

=={{header|Python}}==

===Python2.X version===

 

from pprint import pprint

[54, 86, 174, 134],

[42, 62, 134, 106]]

 

{{out}}

Factors out accesses to <code>A[i], L[i], and L[j]</code> by creating <code>Ai, Li and Lj</code> respectively as well as using <code>enumerate</code> instead of <code>range(len(some_array))</code>.

 

L = [[0.0] * len(A) for _ in range(len(A))]

for i, (Ai, Li) in enumerate(zip(A, L)):

Li[j] = sqrt(Ai[i] - s) if (i == j) else \

(1.0 / Lj[j] * (Ai[j] - s))

 

{{out}}

(As above)

=={{header|q}}==

 

ak:{[m;k] (),/:m[;k]til k:k-1}

akk:{[m;k] m[k;k:k-1]}

show cholesky (25 15 -5f;15 18 0f;-5 0 11f)

-1"";

 

{{out}}

9.899495 1.624554 1.849711 1.392621

</pre>

=={{header|R}}==

# [,1] [,2] [,3]

# [1,] 5 0 0

# [2,] 5.185450 6.565905 0.000000 0.000000

# [3,] 12.727922 3.046038 1.649742 0.000000

=={{header|Racket}}==

#lang racket

(require math)

[54 86 174 134]

[42 62 134 106]]))

Output:

'#(#(5 0 0)

#(3 3 0)

#( 9.899494936611665 1.6245538642137891 1.849711005231382 1.3926212476455924))

 

 

=={{header|REXX}}==

<br>REXX number normalization) &nbsp; can be removed from the line &nbsp; (number 40) &nbsp; which contains the source statement:

niner = '25 15 -5' , /*define a 3x3 matrix with elements. */

'15 18 0' ,

do r=1 for ord

do c=1 for r; $=0; do i=1 for c-1; $= $ + !.r.i * !.c.i; end /*i*/

else !.r.c= 1 / !.c.c * (@.r.c - $)

end /*c*/

numeric form; m.=9; parse value format(x,2,1,,0) 'E0' with g 'E' _ .; g=g*.5'e'_ %2

do j=0 while h>9; m.j=h; h=h%2+1; end /*j*/

{{out|output}}

<pre>

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|Ring}}==

# Project : Cholesky decomposition

 

load "stdlib.ring"

see nl

next

Output:

<pre>

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|Ruby}}==

 

class Matrix

def cholesky_factor

raise ArgumentError, "must provide symmetric matrix" unless symmetric?

[22, 70, 86, 62],

[54, 86, 174, 134],

{{out}}

<pre>

 

{{trans|C}}

let mut res = vec![0.0; mat.len()];

for i in 0..n {

show_matrix(res2, dimension);

}

 

{{out}}

9.8995 1.6246 1.8497 1.3926

</pre>

=={{header|Scala}}==

 

// Assuming matrix is positive-definite, symmetric and not empty...

(l2.matrix.flatten.zip(r2)).foreach{ case (result,test) =>

assert(math.round( result * 100000 ) * 0.00001 == math.round( test * 100000 ) * 0.00001)

=={{header|Scilab}}==

 

The Cholesky decomposition is builtin, and an upper triangular matrix is returned, such that $A=L^TL$.

 

chol(a)

ans =

0. 6.5659052 3.0460385 1.6245539

0. 0. 1.6497422 1.849711

=={{header|Seed7}}==

include "float.s7i";

include "math.s7i";

writeln;

writeMat(cholesky(m2));

 

Output:

9.89950 1.62455 1.84971 1.39262

</pre>

=={{header|Sidef}}==

{{trans|Perl}}

var chol = matrix.len.of { matrix.len.of(0) }

for row in ^matrix {

}

return chol

 

Examples:

[ 15, 18, 0 ],

[ -5, 0, 11 ] ];

cholesky(example2).each { |row|

say row.map {'%7.4f' % _}.join(' ');

{{out}}

<pre>

9.8995 1.6246 1.8497 1.3926

</pre>

=={{header|Smalltalk}}==

FloatMatrix>>#cholesky

| l |

l at: k @ i put: aki - partialSum * factor reciprocal]]].

^l

=={{header|Stata}}==

See [http://www.stata.com/help.cgi?mf_cholesky Cholesky square-root decomposition] in Stata help.

: a=25,15,-5\15,18,0\-5,0,11

 

3 | 12.72792206 3.046038495 1.649742248 0 |

4 | 9.899494937 1.624553864 1.849711005 1.392621248 |

 

=={{header|Tcl}}==

{{trans|Java}}

set m [llength $a]

set n [llength [lindex $a 0]]

}

return $l

Demonstration code:

{25 15 -5}

{15 18 0}

{42 62 134 106}

}

{{out}}

<pre>

{4.242640687119285 0.0 0.0 0.0} {5.185449728701349 6.565905201197403 0.0 0.0} {12.727922061357857 3.0460384954008553 1.6497422479090704 0.0} {9.899494936611667 1.624553864213788 1.8497110052313648 1.3926212476456026}

</pre>

=={{header|VBA}}==

This function returns the lower Cholesky decomposition of a square matrix fed to it. It does not check for positive semi-definiteness, although it does check for squareness. It assumes that <code>Option Base 0</code> is set, and thus the matrix entry indices need to be adjusted if Base is set to 1. It also assumes a matrix of size less than 256x256. To handle larger matrices, change all <code>Byte</code>-type variables to <code>Long</code>. It takes the square matrix range as an input, and can be implemented as an array function on the same sized square range of cells as output. For example, if the matrix is in cells A1:E5, highlighting cells A10:E14, typing "<code>=Cholesky(A1:E5)</code>" and htting <code>Ctrl-Shift-Enter</code> will populate the target cells with the lower Cholesky decomposition.

 

 

Dim A() As Double, L() As Double, sum As Double, sum2 As Double

Cholesky = L

End Function

 

=={{header|zkl}}==

Using the GNU Scientific Library:

fcn lowerCholesky(m){ // trans: C

rows:=m.rows;

}

lcm

{{out}}

<pre>

Or, using lists:

{{trans|C}}

rows:=mat.len();

r:=(0).pump(rows,List().write, (0).pump(rows,List,0.0).copy); // matrix of zeros

}

r

printM(cholesky(ex1));

println("-----------------");

L(54.0, 86.0, 174.0, 134.0,),

L(42.0, 62.0, 134.0, 106.0,) );

{{out}}

<pre>

9.89949 1.62455 1.84971 1.39262

</pre>

=={{header|ZX Spectrum Basic}}==

{{trans|BBC_BASIC}}

20 LET d=3000: GO SUB 1000: GO SUB 4000: GO SUB 5000

30 STOP

5050 PRINT

5060 NEXT r